Package: celliverse
Type: Package
Title: An Ecosystem for Exploring the Universe of Single-Cell Data
Language: en-US
Version: 0.0.2.9000
Authors@R: 
    person("Adrian", "Salavaty",
      role = c("aut", "cre"),
      email = "abbas.salavaty@gmail.com",
      comment = c(ORCID = "0000-0001-9320-5889"))
Description: Contains functions for single-cell RNA sequencing data
        analysis. It provides core functionalities for clustering
        cells, identifying markers for predefined clusters, performing
        sub-clustering of major cell populations, and discovering
        markers within custom-selected subsets of cells. 'CelliVerse'
        also includes methods for analyzing cluster similarity and
        generating intuitive visualizations. Designed to be independent
        of library size and other sample- or cell-level confounding
        effects, 'CelliVerse' ensures reliable and interpretable
        results across a wide range of datasets. Fred Viole and David
        Nawrocki (2013, ISBN:1490523995). Csardi G, Nepusz T (2006).
        "The 'igraph' software package for complex network research."
        InterJournal, Complex Systems, 1695. Adopted algorithms and
        sources are referenced in function document.
Imports: Matrix, Seurat, SummarizedExperiment, scales, ggplot2,
        magrittr, igraph, cli, dplyr, data.table, stringr, tidyr,
        RColorBrewer, ggnewscale, patchwork, tidyselect, methods, Rcpp
LinkingTo: Rcpp, RcppEigen
Suggests: R.rsp, htmltools, knitr, rmarkdown, plumber, jsonlite, httr2,
        processx, later, promises, callr, httpuv, openssl, fs, svglite,
        zip, withr, SeuratObject, ComplexHeatmap, hdf5r, rstudioapi
Depends: R (>= 4.1.0)
URL: https://github.com/asalavaty/celliverse,
        https://asalavaty.github.io/celliverse/
BugReports: https://github.com/asalavaty/celliverse/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
LazyDataCompression: bzip2
RoxygenNote: 7.3.3
VignetteBuilder: R.rsp
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: https://asalavaty.r-universe.dev
Date/Publication: 2026-09-14 00:24:46 UTC
RemoteUrl: https://github.com/asalavaty/celliverse
RemoteRef: HEAD
RemoteSha: ff3327b08947f637ae5c6012c6d0a966b487dd61
NeedsCompilation: yes
Packaged: 2026-10-14 06:35:24 UTC; root
Author: Adrian Salavaty [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9320-5889>)
Maintainer: Adrian Salavaty <abbas.salavaty@gmail.com>